miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|109857052|gb|DW486031.1|DW486031 GCAGAAATTCGCTTTGCTCCTTTTGTTCTGAGAGAGAGAGACCGAAAGACAAAACTAAAAGCATATAATCTCCGATATGG
ATTTCTCGGAGCAAGATGTGGACCTCTTTGGAGATGACCATAACAAGGACAATCGCGATGATTCCCGTGAATCCTCTTCA
TCTCATTCATCTTCATCATCATCCTCCGCTTCATCGTCGTCGTCGGCTTCTTCTTCGTCCAACGGCAGCGACGGCGGAGA
TAGCAGCAGTGCCAGTGGAAGCGCTAGCAGCGGAGGAGAAGAGGAAAATGGAGAAGAAGTTAGCAATGTTAATACCCATA
ATTATGATTATAATGACAATATTGAAAGGAGTATTTTTGGGTATGAAGAGGAAGAAGAGGAGAAAGATCTCTTTGGGTCT
GATAACGAAGATTACTGTAAAACCACTGCCACTAGCCCTTTCCCTATTCCTGTATTGCCCGTTATTCGTAATACTAATAA
CCCAGGTAGAGGAGGTTTTGGACGGGGTCGTTGGCCCAGTGATAGAGGAGCTGGTATCCTTGGCCGTCCTGGTTATCCTC
CTAGGCAAGGTTATGGGTATGGAAACAAATTTGCTAATGGACATCGTGATGAGCGTTTCGTTTCTGAGCTGAAATTTTCC
AAGAGTGAAGAGACGTTATCTAGAAAATGCATTGCTTTTCAGGAACCATGTGAACTTGCTTGTTATAGCCGTGTAGAAGG
TGGAGATGTCTACTTTG




Most similar to sp|Q8RY73|DOM3Z_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8RY73|DOM3Z_ARATH Protein Dom3z homolog, chloroplastic
           OS=Arabidopsis thaliana GN=At4g17620 PE=1 SV=1
          Length = 544

 Score =  123 bits (309), Expect = 1e-27
 Identities = 73/148 (49%), Positives = 87/148 (58%), Gaps = 9/148 (6%)
 Frame = +2

Query: 320 NYDYNDNIERSIFGYEEEEEE----KDLFGSDNEDYCKTTATSPFPIPVLPV-IRNTNNP 484
           +Y  NDN E  ++ YEEEEEE    KDLFGSDNE+Y KT A S + IPVLP    N N+ 
Sbjct: 89  SYRSNDNGESGVYPYEEEEEEEEDEKDLFGSDNEEYTKTPAISTYSIPVLPAGWSNDNHG 148

Query: 485 XXXXXXXXXWPSDRGA-GILXXXXXXXXXXXXXXN---KFANGHRDERFVSELKFSKSEE 652
                    W + RG  G+L                  ++ N  RDERFVSELK SKS+E
Sbjct: 149 GRGGMGRGRWSNGRGGPGLLPRPGPYPGRGGNRGGFGGRYQNYQRDERFVSELKLSKSKE 208

Query: 653 TLSRKCIAFQEPCELACYSRVEGGDVYF 736
           TL+RK   FQEPCEL CYSRVEGG+V +
Sbjct: 209 TLARKQTNFQEPCELTCYSRVEGGEVIY 236